PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013905001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 278aa    MW: 32105.3 Da    PI: 7.3253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013905001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19114164255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ k++g
  GSVIVT01013905001 114 HYRGVRRRS-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFKMRG 164
                        69****887.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-35114178IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22114173IPR016177DNA-binding domain
PROSITE profilePS5103224.144114172IPR001471AP2/ERF domain
CDDcd000181.31E-29114172No hitNo description
Gene3DG3DSA:3.30.730.102.9E-32114173IPR001471AP2/ERF domain
PfamPF008479.3E-14114164IPR001471AP2/ERF domain
PRINTSPR003675.0E-13115126IPR001471AP2/ERF domain
PRINTSPR003675.0E-13154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MWEEPKKYPR NHCLFWRNNI NPTFEYTNPT YDVDNYHKEY FSVFIFIAMA EEASSLHLIH  60
QQLLFDFESF ESFFETKCHK TSTLSHRRLP LSILVPQPTV SQSPVESDSG DIMHYRGVRR  120
RSWGKFAAEI RDPNRRGSRV WLGTFETAIE AARAYDRAAF KMRGSKAILN FPLEADNWSG  180
SDSPAISGRK RERDSKTEER QQVEIKVLKK EEHLPESDCK VAVACNVLGV SPLTPSNWRA  240
VWEERDMEGI FHLPPLTPLS PHPWIAYTQL MGLINTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-29114177568ATERF1
2gcc_A6e-29114177568ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.252950.0fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4463850.0AM446385.2 Vitis vinifera contig VV78X015432.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281779.11e-154PREDICTED: ethylene-responsive transcription factor 5
SwissprotQ404789e-60ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLF6I2N81e-170F6I2N8_VITVI; Putative uncharacterized protein
STRINGVIT_16s0013g00900.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-41ERF family protein